Electrogen · DIET partner donor · Iron reducer
Geobacter metallireducens GS-15
Thermodesulfobacteriota · Desulfuromonadia · Geobacteraceae
- Aromatic degrader
- Uranium bioremediation
- Tier 1
- DIET donor
01 · Identity
Identity
Where this organism sits in the tree of life, how to obtain it, and what a cell looks like.
Lineage
- domainBacteria
- ›phylumThermodesulfobacteriota
- ›classDesulfuromonadia
- ›orderGeobacterales
- ›familyGeobacteraceae
- ›genusGeobacter
- ›speciesGeobacter metallireducens GS-15
Formerly classified as Deltaproteobacteria.
Culture collections & accessions
- DSMZ
- DSM 7210
- ATCC
- ATCC 53774
- NCBI taxon
- 269799
- Genome
- GCF_000012585.1
- Status
- Type strain
Isolation
From Potomac River sediment, Maryland, USA by Lovley DR, Phillips EJP (1987).
Lovley DR, Phillips EJP (1988). Manganese inhibition of microbial iron reduction in anaerobic sediments.
Genome
Cell morphology
Rod, Gram-negative (diderm)
- Motile: yes
- Pili: yes
- Outer-membrane vesicles: no
- Spore-forming: no
02 · Electron transfer
Electron transfer
How electrons cross the cell envelope — the property that makes a microbe useful in an electrochemical system.
Mechanisms
- Outer-membrane cytochromes: yes
- Conductive pili / nanowires: yes
03 · Growth envelope
Growth envelope
The conditions this organism tolerates and what it eats and breathes — the operating window for a reactor.
Energy metabolism
Electron donors
- Acetate
- Ethanol
- aromatic compounds
Electron acceptors
- Fe(III)
- Mn(IV)
- U(VI)
- Anode
- Nitrate
Carbon sources
- Acetate
- Ethanol
- Benzoate
- Toluene
- Phenol
- p-cresol
- Butyrate
- Propionate
- Respiratory: yes
- Fermentative: no
Metabolism — detail
- ATP synthase type
- Proton dependent
- Energy conservation mechanism
- Oxidative phosphorylation
04 · Growth & electron-transfer kinetics
Growth & electron-transfer kinetics
How fast this organism grows and how hard it pushes electrons into an anode, as the corpus reports it, and what those constants imply when you run them.
Kinetic evidence
| Parameter | Median | 10–90 % | n | Source |
|---|---|---|---|---|
| Max. specific growth rate μmax | 0.06 h⁻¹ | 0.03–0.12 | 3 | genus prior · 2 refs |
| Half-saturation constant Ks | 90 mg/L | 20–200 | 2 | genus prior · 2 refs |
| Biomass yield Y | 0.07 g/g | 0.04–0.1 | 2 | genus prior · 2 refs |
| Decay coefficient kd | Not in the corpus yet | |||
| Exchange current density i₀ | Not in the corpus yet | |||
| Transfer coefficient α | Not in the corpus yet | |||
| Tafel slope | Not in the corpus yet | |||
Median of the extracted values, the 10–90 % spread behind it and how many values it pools.
36 rows were not pooled: their unit could not be converted unambiguously.
Evidence rows (36)
Listed, not pooled (36)
- K_M0.35 mMNot verifiedgenus rowconfidence 0.93
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM = 0.28-0.42 mM (2nd cycle) || range: [0.28, 0.42] || canonical_organism: geobacter_sulfurreducens_pca || canonical_substrate: acetate”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.35 mMNot verifiedgenus rowconfidence 0.93
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM = 0.28-0.42 mM (2nd cycle) || range: [0.28, 0.42] || canonical_organism: geobacter_sulfurreducens_pca || canonical_substrate: acetate”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- vmax0.0034 mmol/h/cm²Not verifiedgenus rowconfidence 0.92
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax = 0.0031-0.0037 mmol h⁻¹ cm⁻² (2nd cycle) || range: [0.0031, 0.0037] || canonical_organism: geobacter_sulfurreducens_pca || canonical_substrate: acetate”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0034 mmol/h/cm²Not verifiedgenus rowconfidence 0.92
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax = 0.0031-0.0037 mmol h⁻¹ cm⁻² (2nd cycle) || range: [0.0031, 0.0037] || canonical_organism: geobacter_sulfurreducens_pca || canonical_substrate: acetate”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0042 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0051 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0031 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0037 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- K_M1.02 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M2.61 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.28 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.42 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- vmax0.0042 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0051 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0031 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0037 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- K_M1.02 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M2.61 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.28 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.42 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- vmax0.0042 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0051 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0031 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0037 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- K_M1.02 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M2.61 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.28 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.42 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- vmax0.0042 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0051 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0031 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- vmax0.0037 mmol Ac⁻ h⁻¹ cm⁻²Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“vmax,Ac and KM,Ac, decreased from 0.0042–0.0051 mmol Ac−h−1 cm−2 to 0.0031–0.0037 mmol Ac−h−1 cm−2”
Not used in an estimate · unrecognised kinetic parameter "vmax"
- K_M1.02 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M2.61 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.28 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
- K_M0.42 mM Ac⁻Not verifiedgenus rowconfidence 0.9
Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms · 2020 · 10.1371/journal.pone.0234077
“KM,Ac, decreased from 1.02–2.61 mM Ac− to 0.28–0.42 mM Ac−”
Not used in an estimate · Michaelis-Menten Km, not Monod Ks
Genus-level prior: Geobacter metallireducens
A genus-level prior is a summary for the whole genus, not a measurement on this strain.
Constants that drive the simulation
Scenario — values you set, not evidence
Growth simulation
Scenario: Initial substrate 1000 mg/L · Initial attached biomass 0.1 g/m² · Anode area per liquid volume 100 m²/m³ · Duration 72 h · Batch. Values you set, not evidence.
No current model
The current needs Max. current density jmax, Half-saturation potential E_KA, which this source does not have.
- Substrate-saturated growth
- Slowing
- Stationary
Monod growth has no lag phase; the bands mark where the net growth rate is near its maximum, falling, near zero or negative.
Simulator notes
- decayPerH absent: no endogenous decay term, so growth is an upper bound
- biofilmDensityKgPerM3 absent: thickness not computed (thicknessUm = null)
- no anodePotentialVvsShe / overpotentialV given: current not computed (currentDensityAPerM2 = null)
These curves are a Monod and Nernst-Monod idealisation (after Marcus et al. 2007 and Torres et al. 2008), parameterised only by the constants listed above: each one carries its n and its 10–90 % range, and a constant with n = 1 has no spread at all. No diffusion inside the biofilm, no detachment, no coulombic-efficiency split. The scenario values are yours, not evidence.
05 · Performance
Performance
Reported electrochemical output, the role it plays in a reactor, and what it produces.
Role in a reactor
06 · Ecology & biofilm
Ecology & biofilm
How it lives on an electrode, who it partners with, and where it is found in nature.
Biofilm
- Forms biofilm: yes
Preferred electrode materials
- Graphite
- carbon cloth
Electron-exchange partners (2)
- gives e⁻ to →Methanosarcina acetivorans
ethanol-fed methanogenic coculture
Co culture demonstrated - gives e⁻ to →Methanothrix harundinacea
ethanol→methane stoichiometric conversion
Co culture demonstrated
Conductive-mineral mediation
- Mediates via conductive minerals: yes
- Magnetite
Magnetite-stimulated DIET with Methanothrix harundinacea (Liu 2015).
Ecosystems
- Freshwater
- Subsurface
- Rice paddy
Isolation sources
- freshwater sediment, Potomac River, USA
07 · Applications, engineering & safety
Applications, engineering & safety
Where it has been put to work, how tractable it is to engineer, and what handling it requires.
Applications (3)
- Bioremediation organicsTRL 5/9
- Bioremediation metalsTRL 5/9
- Bioelectricity generationTRL 4/9
Engineering
Reactor compatibility
- MFC dual chamber
- Smfc soil
- Sediment MFC
Genetics
- Genetically tractable: yes
qPCR targets
- pilA
- ppcA
Biosafety
- Pathogen: no
Modeling assets
Linked GEM: iAF987.metallireducens
08 · Sources & data quality
Sources & data quality
Every value above traces to a citation. This is how complete and how confident the record is.
Record quality
Literature reviewed 2026-04-26 · schema v1.2.0 · updated 2026-04-28 · imported 2026-04-28
Open data gaps (2)
- electrochemical_performance.max_current_density (audit: REQUIRED-missing for electrogen class)
- electrochemical_performance.max_power_density (audit: REQUIRED-missing for electrogen class)
References (2)
- Lovley DR, et al. (1993). Geobacter metallireducens gen. nov. sp. nov. Arch Microbiol 159:336-344.
- Holmes DE, et al. (2017). Metatranscriptomic evidence for DIET between Geobacter and Methanothrix in rice paddy soils. Appl Environ Microbiol 83:e00223-17.doi:10.1128/AEM.00223-17
Version history
- 2026-04-27 · v1.2.0 · messai_curation
- Added genome_metadata, isolation provenance, type-strain confirmation.
- Added DIET conductive_mineral_mediation evidence (magnetite, Liu 2015).
- Did NOT promote partial → comprehensive: audit flags required electrochemical_performance fields as missing. Promotion deferred until citation-supported values are added.